PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA06G00500.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 203aa    MW: 21971 Da    PI: 9.99
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA06G00500.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B379.53.4e-2537142197
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS......-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesg......rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 
                      f+kv tpsdv+k++rlv+pk++ae++         ++ ++ l +ed +g       +W+++++y+ +s++yv+tkGW+++v++++L +gD+v F
  ONIVA06G00500.1  37 FEKVVTPSDVGKLNRLVVPKHYAEKYfplgpvARTSPAGTVLCFEDARGgggggdSTWRFRYSYWSSSQSYVITKGWSRYVRDKRLAAGDTVSF 130
                      99***************************999555557789*****9999******************************************** PP

                      EE-SSSEE..EEEEE CS
               B3  83 kldgrsefelvvkvf 97 
                          r +++l++  +
  ONIVA06G00500.1 131 C---RAGARLFIDCR 142
                      9...44555666655 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.7E-3331154IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2533137IPR015300DNA-binding pseudobarrel domain
CDDcd100171.89E-1736130No hitNo description
PROSITE profilePS5086311.6637145IPR003340B3 DNA binding domain
PfamPF023624.0E-2237143IPR003340B3 DNA binding domain
SMARTSM010191.6E-1537145IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MATIVAWESR NLQLQRGGGG HGGGGGSGGG ERREYMFEKV VTPSDVGKLN RLVVPKHYAE  60
KYFPLGPVAR TSPAGTVLCF EDARGGGGGG DSTWRFRYSY WSSSQSYVIT KGWSRYVRDK  120
RLAAGDTVSF CRAGARLFID CRKRAASVSS SSLVPPALIK VQLPPSRPVV DEEEAACGRR  180
CLRLFGVDLQ LRADASPALD LQL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A9e-413414711120DNA-binding protein RAV1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
GenBankCT8299120.0CT829912.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA128K13, full insert sequence.
GenBankKC0191730.0KC019173.1 Oryza rufipogon cultivar RBPH54 insect-resistance protein (BPH29) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642534.11e-114PREDICTED: B3 domain-containing protein Os06g0107800
SwissprotQ5VS551e-115Y6078_ORYSJ; B3 domain-containing protein Os06g0107800
TrEMBLA0A0E0HJQ41e-146A0A0E0HJQ4_ORYNI; Uncharacterized protein
STRINGBGIOSGA022090-PA1e-144(Oryza sativa Indica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP129472934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61970.16e-41B3 family protein